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Hierarchical cluster of probes mapping to the KEGG pathway “Metabolism of xenobiotics by cytochrome p450”.

Frances M. Van Dolah (22016)
Marion G. Neely (760778)
Lauren E. McGeorge (760779)
Brian C. Balmer (329920)
Gina M. Ylitalo (192416)
Eric S. Zolman (329927)
Todd Speakman (329925)
Carrie Sinclair (760780)
Nicholas M. Kellar (439649)
Patricia E. Rosel (760781)
Keith D. Mullin (760782)
Lori H. Schwacke (329931)

Publication date

June 2015

DOI

10.1371/journal.pone.0130934.g006

Abstract

<p>Heat map color is relative to the median intensity for each probe: red is increased, blue is decreased, log<sub>2</sub> scale.</p

Extracted data

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<p><b>(A)</b> Venn diagram displays the numbers of common and unique probes in PDAC progression; <b>...

Heat map of molecular pathways based on KEGG analysis IDs for treated males (m) and females (fm), color-coded by enrichment-score.

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Heatmap indicating enriched and depleted KEGG metabolic pathways.

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<p>The extreme blue color indicates that the enzyme category was significantly depleted and the extr...

Heat map showing differential abundance of fecal metabolites in various study groups (Panels A-D): Metabolites profiles for Atm-KO-CM group, Atm-KO-RM, WT-CM, and WT-RM, respectively.

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Heat map of metabolite levels profiled in the heterogeneous SA13011 strain (HeR) and its highly homogeneous methicillin resistant derivative SA13011-HoR (SA13011+ OXA 0.5 µg/ml).

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<p>Heat maps were generated with the concentrations of potential candidate metabolites with univaria...

Heat map showing the unsupervised hierarchical clustering of the fecal samples according to the similarity of metabolome composition.

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Heat map showing the significantly dysregulated metabolites identified between different infected groups in ESI+ mode.

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Yumin Liu (136589)
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Lei Yao (75933)
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Heatmap plots of pathway enrichment signatures.

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Ute Metzger (564799)
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Hooman K. Moghadam (519773)
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Claude Chelala (3016)
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Sam Lattimore (276414)
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<p><b>(A)</b> Venn diagram displays the numbers of common and unique probes in PDAC progression; <b>...

Heat map of molecular pathways based on KEGG analysis IDs for treated males (m) and females (fm), color-coded by enrichment-score.

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Mikhail Shaposhnikov (514323)
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Sergey Mylnikov (514330)
Alexey Dmitriev (514331)
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Peter Fedichev (514333)
Anna Kudryavtseva (514334)

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<p>Heat map of molecular pathways based on KEGG analysis IDs for treated males (m) and females (fm),...

Heatmap indicating enriched and depleted KEGG metabolic pathways.

Christina M. Taylor (215072)
Qi Wang (22418)
Bruce A. Rosa (440552)
Stanley Ching-Cheng Huang (125279)
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Edward J. Pearce (125295)
Sahar Abubucker (51910)
Makedonka Mitreva (27680)

August 2013

<p>The extreme blue color indicates that the enzyme category was significantly depleted and the extr...

Heat map showing differential abundance of fecal metabolites in various study groups (Panels A-D): Metabolites profiles for Atm-KO-CM group, Atm-KO-RM, WT-CM, and WT-RM, respectively.

Amrita K. Cheema (515119)
Irene Maier (2609950)
Tyrone Dowdy (623297)
Yiwen Wang (666361)
Rajbir Singh (451210)
Paul M. Ruegger (132233)
James Borneman (132240)
Albert J. Fornace Jr (242208)
Robert H. Schiestl (1632)

April 2016

<p>Each column represents a sample, and each row represents a metabolite. The mean signal intensity ...

Heat map of metabolite levels profiled in the heterogeneous SA13011 strain (HeR) and its highly homogeneous methicillin resistant derivative SA13011-HoR (SA13011+ OXA 0.5 µg/ml).

Mignon A. Keaton (227579)
Roberto R. Rosato (405901)
Konrad B. Plata (405898)
Christopher R. Singh (405900)
Adriana E. Rosato (405902)

August 2013

<p>Red indicates high levels and green indicates low levels of each biochemical arranged on they-axi...

Variations of KEGG metabolic pathways in the functional microbial communities.

Maomeng Tong (486902)
Xiaoxiao Li (195315)
Laura Wegener Parfrey (24693)
Bennett Roth (195351)
Andrew Ippoliti (195355)
Bo Wei (188204)
James Borneman (132240)
Dermot P. B. McGovern (179863)
Daniel N. Frank (158306)
Ellen Li (158263)
Steve Horvath (28847)
Rob Knight (11635)
Jonathan Braun (45815)

November 2013

<p>The heatmap shows the functional profiles of FMCs (columns) based on the relative abundance of KE...

Heat map showing the unsupervised hierarchical clustering of the fecal samples according to the similarity of metabolome composition.

Robin D. Couch (127589)
Karl Navarro (486641)
Masoumeh Sikaroodi (255013)
Pat Gillevet (353532)
Christopher B. Forsyth (194076)
Ece Mutlu (486642)
Phillip A. Engen (486643)
Ali Keshavarzian (194116)

November 2013

<p>The 20 minute metabolomes are compared in (A), while the 18 hour metabolomes are compared in (B)....

Heat map of metabolomic differences between HFpEF and controls.

Beshay N. Zordoky (745276)
Miranda M. Sung (745277)
Justin Ezekowitz (745278)
Rupasri Mandal (114829)
Beomsoo Han (745279)
Trent C. Bjorndahl (453983)
Souhaila Bouatra (229871)
Todd Anderson (577415)
Gavin Y. Oudit (320312)
David S. Wishart (5821)
Jason R. B. Dyck (380083)

May 2015

<p>Heat maps were generated with the concentrations of potential candidate metabolites with univaria...

Heat map showing the unsupervised hierarchical clustering of the fecal samples according to the similarity of metabolome composition.

Robin D. Couch (127589)
Allyson Dailey (699615)
Fatima Zaidi (699616)
Karl Navarro (486641)
Christopher B. Forsyth (194076)
Ece Mutlu (486642)
Phillip A. Engen (486643)
Ali Keshavarzian (194116)

March 2015

<p>The endoscopy collected fecal metabolomes are compared in (A) while the home collected fecal meta...

Heat map showing the significantly dysregulated metabolites identified between different infected groups in ESI+ mode.

Chun-Xue Zhou (803103)
Dong-Hui Zhou (107155)
Hany M. Elsheikha (803104)
Guang-Xue Liu (803105)
Xun Suo (317782)
Xing-Quan Zhu (107159)

October 2015

<p>Heat maps show a clear separation of the metabolomic profile between different infected groups. N...

Metabolic networks disturbed by SCI: KEGG mapping.

Jin Peng (287324)
Jun Zeng (403080)
Bin Cai (110662)
Hao Yang (328526)
Mitchell Jay Cohen (550966)
Wei Chen (23863)
Ming-Wei Sun (550967)
Charles Damien Lu (543098)
Hua Jiang (123031)

April 2014

<p>Nodes on the KEGG metabolic pathway for SCI severity (red) and BBB scoring (green) are shown as a...

Putatively identified metabolites mapped onto the KEGG metabolic pathways.

Andrea Trochine (567830)
Darren J. Creek (167726)
Paula Faral-Tello (567831)
Michael P. Barrett (167748)
Carlos Robello (238938)

May 2014

<p>Coloured nodes (putatively identified metabolites) demonstrate coverage of diverse metabolic path...

Heatmaps show changes in metabolites compared to controls at EPM group, aroma-EPM group.

Yani Wu (136569)
Yinan Zhang (136571)
Guoxiang Xie (136575)
Aihua Zhao (136578)
Xiaolan Pan (136582)
Tianlu Chen (136585)
Yixue Hu (136587)
Yumin Liu (136589)
Yu Cheng (136592)
Yi Chi (136600)
Lei Yao (75933)
Wei Jia (136607)

September 2012

<p>Shades of red and blue represent fold increase and fold decrease of a metabolite, respectively, i...

Heatmap plots of pathway enrichment signatures.

Michael Römer (564122)
Johannes Eichner (236560)
Ute Metzger (564799)
Markus F. Templin (564800)
Simon Plummer (340085)
Heidrun Ellinger-Ziegelbauer (564123)
Andreas Zell (81517)

May 2014

<p>The heatmaps depict overrepresentation of genes involved in relevant pathways among the genes der...

Illustration of the five clusters by heat map images.

Elena Sarropoulou (68868)
Hooman K. Moghadam (519773)
Nikos Papandroulakis (519774)
Fernando De la Gándara (519775)
Aurelio Ortega Garcia (519776)
Pavlos Makridis (284496)

February 2014

<p>Heat map images showing the genes grouped by the K-means clustering method. Stages are indicated ...

Hierarchical clustering of all the PanIN and PDAC lesions.

Tatjana Crnogorac-Jurcevic (57627)
Claude Chelala (3016)
Sayka Barry (57623)
Tomohiko Harada (276412)
Vipul Bhakta (276413)
Sam Lattimore (276414)
Stipo Jurcevic (276415)
Mary Bronner (276416)
Nicholas R. Lemoine (276417)
Teresa A. Brentnall (186815)

January 2013

<p><b>(A)</b> Venn diagram displays the numbers of common and unique probes in PDAC progression; <b>...